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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9675701_9736914_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9675701 - 9736914
Intron Length:
61214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTACTTTATAC
Flanking Amino Acid:
VHIPTDIYEGSSPWVDKSRT
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
83.5
0.75
0.7
77.6
36.1
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
59
0.26
1.7
72.38
38.5

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043964
9440165 - 9878311
438147