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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96792154_96792250_R

Intron Information:

Intron Rank:
129960
Intron Class:
major
Intron Phase:
Intron Coordinates:
96792154 - 96792250
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTC
5'SS Class:
major
3'SS Sequence:
TGTTTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATGGATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
68.8
42.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.5
0.55
0.9
66.7
39.7
Minor 5ss
40.3
-1.1
2.8
53.3
43.8
Minor BPS
46.3
-0.3
2.6
68.14
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047955
96789623 - 96792288
2666