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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96945562_96948589_F

Intron Information:

Intron Rank:
131953
Intron Class:
major
Intron Phase:
Intron Coordinates:
96945562 - 96948589
Intron Length:
3028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAGA
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.9
0.74
0.8
78
30.8
Minor 5ss
41.3
-1
2.5
51.9
44.5
Minor BPS
57.2
0.09
1.6
61.87
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032485
96945250 - 96950256
5007