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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96948667_96949496_F

Intron Information:

Intron Rank:
131954
Intron Class:
major
Intron Phase:
Intron Coordinates:
96948667 - 96949496
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
GAGCATTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
46.3
-0.3
1.8
50.73
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032485
96945250 - 96950256
5007