Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96983324_96991240_F

Intron Information:

Intron Rank:

147021

Intron Class:

major

Intron Phase:

Intron Coordinates:

96983324 - 96991240

Intron Length:

7917

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGAAC

5'SS Class:

strong_major

3'SS Sequence:

GCAATTCATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

TTATTCACACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

38.2

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

66.5

0.37

62.6

43.1

Minor 5ss

31.2

-2.2

3.4

41.6

45.4

Minor BPS

48.1

-0

2.1

73.85

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034075

96983048 - 96992096

9049