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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_969880_970303_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
969880 - 970303
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
CCCCCTTTCAGG
Flanking Amino Acid:
LEKTVIRALHGPWDPELPDD
Intron Amino Acid Position:
1167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
42
-0.7
2
39.23
45

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943