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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96994457_96999558_F

Intron Information:

Intron Rank:
147018
Intron Class:
major
Intron Phase:
Intron Coordinates:
96994457 - 96999558
Intron Length:
5102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTCCTATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
56.5
0.2
1.6
68.67
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036910
96990166 - 96999951
9786
ENSAPLT00000024074
96991711 - 96999951
8241