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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97090212_97092709_F

Intron Information:

Intron Rank:
128824
Intron Class:
major
Intron Phase:
Intron Coordinates:
97090212 - 97092709
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGACATTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.8
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.3
34.7
Minor 5ss
44.8
-0.6
2.7
59.2
45.4
Minor BPS
50.1
0.08
1.7
68.99
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030697
97090052 - 97093579
3528