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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97124156_97124640_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97124156 - 97124640
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCAC
5'SS Class:
major
3'SS Sequence:
TGCATTTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TAGCAACTAACT
Flanking Amino Acid:
AEDAFSAHRKLLLYHNPNFK
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
65.8
40.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.7
0.65
0.8
76.9
37.2
Minor 5ss
32.8
-2
3.2
43.8
43.9
Minor BPS
45.7
-0.2
2.1
66.42
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023578
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023463
97123334 - 97125747
2414