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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97150123_97155018_R

Intron Information:

Intron Rank:
131281
Intron Class:
major
Intron Phase:
Intron Coordinates:
97150123 - 97155018
Intron Length:
4896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTATTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
65.4
0.35
1
68.9
30.8
Minor 5ss
33.8
-1.8
2.9
43.3
43.9
Minor BPS
46.6
-0.1
2
69.54
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017847
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034639
97147128 - 97155596
8469