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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97269731_97279471_R

Intron Information:

Intron Rank:
132618
Intron Class:
major
Intron Phase:
Intron Coordinates:
97269731 - 97279471
Intron Length:
9741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
CTTTTCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
72
0.49
0.9
69.8
35.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
68.8
0.59
1.4
75.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019285
97269479 - 97300307
30829