Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97284368_97335871_F

Intron Information:

Intron Rank:

139881

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

97284368 - 97335871

Intron Length:

51504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTACTTCTGTGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

TTTTTCCTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

76.2

39.9

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

51.2

0.03

1.7

65.4

40.9

Minor 5ss

35.6

-1.6

2.7

37.6

Minor BPS

59.8

0.38

1.9

83.92

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025195

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044478

97284150 - 97336033

51884