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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9736985_9737821_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9736985 - 9737821
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTGTTTATTT
Flanking Amino Acid:
IDLYDVRRRPWYIQGAASPK
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.6
0.75
0.8
81.4
34.9
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
48.6
-0
2
66.47
45.5

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000022965
9440165 - 9841561
401397