Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9739304_9760850_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9739304 - 9760850

Intron Length:

21547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CTGTCTTTAATG

Flanking Amino Acid:

SDDDFVNVVSFNNNAQNVSC

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

81.7

31.9

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

0.81

0.8

79.9

37.7

Minor 5ss

35.3

-1.7

2.9

46.6

41.8

Minor BPS

0.49

1.4

66.43

42.4

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278