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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_974099_974418_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
974099 - 974418
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
CCCAATTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCCCCCAATT
Flanking Amino Acid:
GEEPFFARVKTLLKKDGHVE
Intron Amino Acid Position:
2283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.3
0.48
0.9
67.9
37.2
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
59.3
0.37
1.9
83.01
37.8

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943