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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97521717_97525946_F

Intron Information:

Intron Rank:
141108
Intron Class:
major
Intron Phase:
Intron Coordinates:
97521717 - 97525946
Intron Length:
4230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
52.3
0.15
1.8
69.6
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026001
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032494
97521608 - 97536961
15354