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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97535308_97536485_F

Intron Information:

Intron Rank:
141106
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
97535308 - 97536485
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCCCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
ATTAGACTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
72.1
40.1
Major BPS
67
0.42
1.1
58
38.5
Major PPT
80.7
0.69
0.7
74.9
27.3
Minor 5ss
59.5
0.32
2.7
83.5
34.9
Minor BPS
45
-0.3
2.2
69.32
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026001
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032494
97521608 - 97536961
15354
ENSAPLT00000018849
97525845 - 97542037
16193