About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97536574_97536709_F

Intron Information:

Intron Rank:
141111
Intron Class:
major
Intron Phase:
Intron Coordinates:
97536574 - 97536709
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
51.6
0.13
2.1
81
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026001
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032494
97521608 - 97536961
15354