Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97582721_97625228_F

Intron Information:

Intron Rank:

142271

Intron Class:

major

Intron Phase:

Intron Coordinates:

97582721 - 97625228

Intron Length:

42508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CATTGTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TTTTGCTGACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

81.5

32.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

82.6

0.73

0.9

76.6

37.2

Minor 5ss

32.1

-2

3.5

48.8

47.4

Minor BPS

0.15

2.2

76.11

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028365

97582460 - 97628052

45593