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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_975902_977107_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
975902 - 977107
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGCT
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
GCTGCTTCACCT
Flanking Amino Acid:
KESKKLQKDVRWDTNAQKKS
Intron Amino Acid Position:
2411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.4
36.2
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
26.5
-2.7
3.5
39
46.3
Minor BPS
47.4
-0.1
1.9
64.22
46.4

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943