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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9761010_9765228_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9761010 - 9765228
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGTATTTTTACA
Flanking Amino Acid:
FSYAFEQLLNHSVSRANCNK
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
85.8
0.81
0.8
80
37.5
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
56.3
0.19
1.6
68.13
37.8

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000043964
9440165 - 9878311
438147