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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97637192_97641192_F

Intron Information:

Intron Rank:
141579
Intron Class:
major
Intron Phase:
Intron Coordinates:
97637192 - 97641192
Intron Length:
4001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGATACATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
66.3
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70
0.45
1.2
71.5
43.2
Minor 5ss
38.5
-1.3
3.7
56.1
48.1
Minor BPS
57.1
0.3
1.8
74.94
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029580
97636131 - 97641395
5265