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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97719651_97725449_F

Intron Information:

Intron Rank:
136527
Intron Class:
major
Intron Phase:
Intron Coordinates:
97719651 - 97725449
Intron Length:
5799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGGTATCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79
0.65
0.7
72.6
32.1
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
47
-0.1
1.8
65.1
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023556
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030898
97719412 - 97730453
11042