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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_977808_978043_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
977808 - 978043
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTGACAGTGACA
Flanking Amino Acid:
KVAAPFRRSYW*
Intron Amino Acid Position:
2510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
44.2
-0.4
2.3
57.15
41.9

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943