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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97784580_97785539_R

Intron Information:

Intron Rank:
139600
Intron Class:
major
Intron Phase:
Intron Coordinates:
97784580 - 97785539
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TGTCCCTGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
82.8
0.74
0.6
81.5
23.5
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
51
0.11
1.9
73.21
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047754
97784385 - 97788384
4000