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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97876673_97919055_F

Intron Information:

Intron Rank:
136139
Intron Class:
major
Intron Phase:
Intron Coordinates:
97876673 - 97919055
Intron Length:
42383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGAGC
5'SS Class:
major
3'SS Sequence:
TTTTCATTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.8
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.8
79.4
32.8
Minor 5ss
38.2
-1.3
3.2
52.1
44.7
Minor BPS
65.6
0.49
1.8
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023357
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042212
97876434 - 97932409
55976