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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9788164_9791136_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9788164 - 9791136
Intron Length:
2973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGACTG
5'SS Class:
major
3'SS Sequence:
GATTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATCC
Flanking Amino Acid:
QWTNVYLDALELGLVITGTL
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
60.8
43.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.4
0.46
0.9
62
44.1
Minor 5ss
41.8
-0.9
3.1
53.4
44.7
Minor BPS
65.5
0.47
1.5
74.31
36.6

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000019885
9440165 - 9838362
398198