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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9788164_9795158_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9788164 - 9795158
Intron Length:
6995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGACTG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CACACTTTACTT
Flanking Amino Acid:
QWTNVYLDALLCPNGYYFAI
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
60.8
43.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
41.8
-0.9
3.1
53.4
44.7
Minor BPS
49.3
0.02
1.7
60.9
43.6

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021475
9440165 - 9838442
398278