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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9791206_9792727_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9791206 - 9792727
Intron Length:
1522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GGAATCTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
CATACTCTAACG
Flanking Amino Acid:
NLTKEQNGKINQLILGVMGV
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.3
37
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
60.9
0.25
1.1
51.7
46.6
Minor 5ss
55.8
0.2
2.7
75.2
35.4
Minor BPS
51.4
-0
1.8
58.01
43.4

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000045079
9440165 - 9878311
438147