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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97919119_97931650_F

Intron Information:

Intron Rank:
136138
Intron Class:
major
Intron Phase:
Intron Coordinates:
97919119 - 97931650
Intron Length:
12532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68
42.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.8
82.1
28.4
Minor 5ss
46.6
-0.3
2.8
66.1
45
Minor BPS
57.2
0.22
1.8
75.85
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023357
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030296
97871754 - 97932409
60656
ENSAPLT00000042212
97876434 - 97932409
55976