About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97948687_97983981_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97948687 - 97983981
Intron Length:
35295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTTTGAAA
Flanking Amino Acid:
LAPFEQDFQRRYALFYNRLK
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
62.3
41.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.3
0.55
1.1
78.4
33.9
Minor 5ss
28.5
-2.5
3.6
38.6
46.6
Minor BPS
75.2
0.79
1.3
83.42
30.1

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620
ENSAPLT00000035848
97948055 - 98103148
155094