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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9795234_9802897_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9795234 - 9802897
Intron Length:
7664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTTTTGATC
Flanking Amino Acid:
VLLHPNLQPKNPKSQEPVTL
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.2
0.63
0.9
69.3
41.8
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
68.8
0.58
1.1
73.3
31.5

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000045079
9440165 - 9878311
438147