Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_97993731_98012497_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

97993731 - 98012497

Intron Length:

18767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCTAGTT

5'SS Class:

major

3'SS Sequence:

GGTTGTTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

TTATATTTGACT

Flanking Amino Acid:

SPVPHGSKLKVVIRAQNGEL

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

Major BPS

70.4

0.51

67.1

39.4

Major PPT

75.3

0.57

0.9

68.8

42.1

Minor 5ss

29.9

-2.3

3.7

47.2

48.1

Minor BPS

69.8

0.7

1.4

84.9

35.2

Associated Gene:

Gene:

GBE1

Ensembl Gene ID:

ENSAPLG00000016424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039193

97948055 - 98110674

162620

ENSAPLT00000035848

97948055 - 98103148

155094

ENSAPLT00000029584

97948055 - 98110674

162620

ENSAPLT00000017142

97948055 - 98109823

161769