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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98012624_98013998_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98012624 - 98013998
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGGCTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
VHWNPPQSYIRKHRSPERLK
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
68.9
41.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
38.5
-1.3
3.6
58.2
41.5
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035848
97948055 - 98103148
155094
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620