About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98016591_98017088_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98016591 - 98017088
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCATGCTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCCCCCTTACAA
Flanking Amino Acid:
YQVTSFFAASSRYGTPDDLK
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
100
1.24
0.5
100
0
Major PPT
65.3
0.35
1
61.2
40.1
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
48.1
-0.1
1.8
53.42
44.9

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620
ENSAPLT00000035848
97948055 - 98103148
155094