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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98017299_98041635_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98017299 - 98041635
Intron Length:
24337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LWDSRLFDYSNWEVLRFLLS
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035848
97948055 - 98103148
155094
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620