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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98041752_98041967_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98041752 - 98041967
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATGTCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTCCTTTAAAT
Flanking Amino Acid:
TSMLYHHHGIGTGFSGDYNE
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.3
0.57
0.9
68.9
36.8
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
71.8
0.76
1.3
83.87
36.2

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035848
97948055 - 98103148
155094
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620