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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98046695_98049520_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98046695 - 98049520
Intron Length:
2826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
ATTTCCTTCATT
Flanking Amino Acid:
AMAIPDKWIQIIKELKDEDW
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
75
0.62
1.1
77.2
36
Major PPT
81.3
0.7
0.8
77.3
31.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
75.1
0.87
1.7
90.25
33.9

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039193
97948055 - 98110674
162620
ENSAPLT00000035848
97948055 - 98103148
155094
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769