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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98049632_98053026_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98049632 - 98053026
Intron Length:
3395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TAAACTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
CIAYAESHDQALVGDKTLAF
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.1
0.36
1
59
41.2
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035848
97948055 - 98103148
155094
ENSAPLT00000029584
97948055 - 98110674
162620
ENSAPLT00000017142
97948055 - 98109823
161769
ENSAPLT00000039193
97948055 - 98110674
162620