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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9809953_9811136_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9809953 - 9811136
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATGGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATGG
Flanking Amino Acid:
KIDEPLIQARLANKMDSETL
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
60.7
0.24
1.1
57.6
42.4
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
46.5
-0.4
2
55.23
46.2

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000003267
9440165 - 9838495
398331