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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98101375_98103085_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98101375 - 98103085
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATATCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTCTTTTATAT
Flanking Amino Acid:
PHNYRHNSLMQYNSQTSFSQ
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.3
0.7
0.8
78.4
35.6
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
51.7
0.13
1.7
71.01
39.8

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039193
97948055 - 98110674
162620