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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98101375_98110617_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98101375 - 98110617
Intron Length:
9243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATCTTTTTACTA
Flanking Amino Acid:
PHNYRHNSLMVYIPSRVAIV
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.8
0.58
0.9
70.8
39.2
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
56.2
0.19
1.5
64.17
37.3

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029584
97948055 - 98110674
162620