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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98103149_98110617_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98103149 - 98110617
Intron Length:
7469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
ATCTTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATCTTTTTACTA
Flanking Amino Acid:
SRRCHKHHIKVYIPSRVAIV
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.8
0.58
0.9
70.8
39.2
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
56.2
0.19
1.5
64.17
37.3

Associated Gene:

Gene:
GBE1
Ensembl Gene ID:
ENSAPLG00000016424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039193
97948055 - 98110674
162620