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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9811883_9813645_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9811883 - 9813645
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
GGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCTTAGAAGACT
Flanking Amino Acid:
DEVGYTFLAPREYCSDVKKS
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.2
35.8
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
39.9
-0.7
2.6
64.83
45.7

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000043964
9440165 - 9878311
438147