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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9813744_9816717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9813744 - 9816717

Intron Length:

2974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

ACTCTTTTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

GACTTCTTGACT

Flanking Amino Acid:

IDRNTPNSPSCNTDMVIRVL

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.5

28.5

Major BPS

74.1

0.6

38.9

Major PPT

70.8

0.47

65.6

40.4

Minor 5ss

40.8

-1

2.8

57.5

39.6

Minor BPS

69.9

0.71

1.2

76.3

40.3

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147