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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9818185_9819436_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9818185 - 9819436

Intron Length:

1252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

CTCCCTCCTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCTAT

U12 Branch Point Sequence:

CCTCCTTCTATG

Flanking Amino Acid:

NYIFTAPYYNKSGANSYETG

Intron Amino Acid Position:

765

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

39.5

Major BPS

61.5

0.29

1.3

62.1

44.1

Major PPT

79.8

0.67

0.7

76.8

25.3

Minor 5ss

38.1

-1.3

3.1

55.9

42.3

Minor BPS

43.4

-0.6

1.8

44.34

42.1

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278