About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_981874_982752_R


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
981874 - 982752

Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTACGGTGC

5'SS Class:
major

3'SS Sequence:
TCCTCTCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTCAC

U12 Branch Point Sequence:
CGTTGCTCACTC

Flanking Amino Acid:
KVVGVKSEGEVARCKQLICD

Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79
0.68
1
65
42.1

Major BPS
69.8
0.49
1.1
71.3
36.7

Major PPT
77.8
0.63
0.7
72.7
25.4

Minor 5ss
36
-1.6
3.5
50.3
46.3

Minor BPS
44.2
-0.4
2.1
54.76
43.8

Associated Gene:

Gene:
GDI2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

980221 - 986907
6687