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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98214887_98222423_R

Intron Information:

Intron Rank:
135942
Intron Class:
major
Intron Phase:
Intron Coordinates:
98214887 - 98222423
Intron Length:
7537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
ATCAATTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
35.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.2
0.61
0.9
73.4
40.9
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
64.7
0.54
1.8
84.32
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039519
98214828 - 98223125
8298