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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9822878_9825146_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9822878 - 9825146

Intron Length:

2269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTGTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATGAATA

Flanking Amino Acid:

HLGWWASAAAWSILQQLFLS

Intron Amino Acid Position:

922

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.93

0.8

82.4

29.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.9

0.72

0.9

80.5

Minor 5ss

36.2

-1.6

2.6

40.7

39.2

Minor BPS

56.4

0.2

1.9

74.95

35.9

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147