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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98245513_98253952_F

Intron Information:

Intron Rank:
142966
Intron Class:
major
Intron Phase:
Intron Coordinates:
98245513 - 98253952
Intron Length:
8440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
AAATGGTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
67.3
0.39
1
57.7
43.2
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
40.7
-0.7
2.4
51.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027045
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037366
98244980 - 98255158
10179